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Re: [modeller_usage] Error in multichain modeller
To : Zara Saeed <zara.saeed760ATgmail.com >, modeller_usageATsalilab.org Subject : Re: [modeller_usage] Error in multichain modellerFrom : Modeller Caretaker <modeller-careATsalilab.org >Date : Thu, 23 Jun 2022 12:23:58 -0700Arc-authentication-results : i=1; guitar.compbio.ucsf.eduArc-message-signature : i=1; a=rsa-sha256; d=salilab.org; s=arc; t=1656012239; c=relaxed/simple; bh=lvzfQ0K9KqujGitag8dwXgOsTpUP6gqE/HjdZ/NS7Ds=; h=DKIM-Signature:Message-ID:Date:MIME-Version:Subject:To:From; b=W/V5lPx+M2UjIWe24OIte1h6g03pDvKSRkphkN0mf9B/rG5ptryWoniNjLWuz1Yyhcdjo8h/t7/fiFqYuY9+Vhf4gjHNPmlrAl7cevEqYRSqDlCWn26xDqbHsEcTvB1e9P/8XhWhxeE4sBSAHzyJ1VhUcwCzM6xPu8fL5eB7J/s=Arc-seal : i=1; a=rsa-sha256; d=salilab.org; s=arc; t=1656012239; cv=none; b=ww/GOwXVEgACVqseQqzvXFP4lar8CWyZfXzou/lO9rPpSW51tI7zvCns+vfWeWcB8S7lLMOh0m+HMDdn5dMYM1J30V6xJj7hCQidu9O5dLTVVSJruQQ7q4AObp+OYIWJAg5muvcfiewgX5YQP7/gSbSRtPdK9Chp4KqLBebIGVY=
On 6/19/22 8:04 AM, Zara Saeed via modeller_usage wrote:
I am using the following python file for multichain modelling. I am
sending you my script, structure file and alignment file in the
attachment. When I run this script it gives the following error.
*
raise KeyError("No such chain: %s" % indx)*
*KeyError: 'No such chain: F'*
See https://salilab.org/modeller/10.2/manual/node30.html
Your target sequence contains only two chains (you have a single chain
break) so Modeller will label them A and B, not F.
Ben Webb, Modeller Caretaker
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