Re: [modeller_usage] Modelling missing residues

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 12/14/21 6:22 AM, Karki, Sudeep wrote:
> I have a structure with a small molecule bound in the active site. There 
> are missing residues in the structure, how can I model it? I tried 
> without the small molecule but it forces the neighbor loop to go in the 
> active site and definitely I don´t want that.

Just add the residues that are missing in your template structure to the 
target sequence, aligned with gaps in the template. One example is at
https://salilab.org/modeller/wiki/Missing%20residues

	Ben Webb, Modeller Caretaker
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