Re: [modeller_usage] Quick Question on Automodel

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 3/8/21 4:03 AM, Pedro Guillem wrote:
> Is there an *explicit way *to tell modeller which residue (in the 
> template) must be aligned with which residue in the sequence?

Yes, this is what your alignment is for. If you align residue X in your 
target with residue Y in your template, that's what you'll get in your 
output model, end of story.

> I'm looking to keep the structure identical in some segments.. and have 
> modeller make a best guess in other parts.

See https://salilab.org/modeller/10.0/manual/node23.html

	Ben Webb, Modeller Caretaker
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