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Re: [modeller_usage] remodelling a fragment of protein using different template.
- To: Yogesh Sharma <yogesh.rma13 AT gmail.com>, modeller_usage@listsrv.ucsf.edu
- Subject: Re: [modeller_usage] remodelling a fragment of protein using different template.
- From: Modeller Caretaker <modeller-care@ucsf.edu>
- Date: Tue, 16 Feb 2021 13:25:17 -0800
On 2/15/21 9:11 AM, Yogesh Sharma wrote:
I am trying to model a protein with low homology. I have used ab
initio methods to get a starting structure. but i want to remodel first
50-100 residues according to a different PDB template. is it possible to
do so using modeller?
Sure, just model using two templates, one for the first 50-100 residues
and your ab initio model for the rest. See
https://salilab.org/modeller/FAQ.html#1
Ben Webb, Modeller Caretaker
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