Re: [modeller_usage] Tweaking around with the same alignment

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 12/19/19 3:55 PM, Eugene Radchenko wrote:
> Sometimes I want to play with different Modeller options and parameters 
> while working with the same alignment file.
> However, to avoid overwriting the previous results, I actually have to 
> modify the alignment file and Modeller script anyway by changing the 
> target sequence name.
> Am I doing something wrong and is there a better way?

Right, this is the normal way that automodel names its output files. But 
you can change this by subclassing and overriding the 
get_model_filename() method:
https://salilab.org/modeller/9.23/manual/node75.html

	Ben Webb, Modeller Caretaker
--
modeller-care@ucsf.edu             https://salilab.org/modeller/
Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage