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Re: [modeller_usage] How to (partially) override model.patch_ss_templates() ?

On 11/26/18 2:22 PM, Luca Jovine wrote:

However I just tried what you suggested - shifting the
alignment so that one of the two Cys of a pair is no longer aligned
with the template -, but what happens is that the Cys pairs that I
specified as making an alternative disulfide using special_patches
are now not bonded
You will probably need to experiment a little bit with different alignments. You'll need to be careful not to change the alignment so much that it implies a structure that is inconsistent with the disulfides you want to impose. 

	Ben Webb, Modeller Caretaker
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             https://salilab.org/modeller/
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