[modeller_usage] Fwd: Regarding modelling of dimer

[Bhavik Sawhney <>]

Dear  Sir,
 This is your post regarding modelling of the dimer protein on dimeric template. I have done the required changes in  the ali file (alignment file), do I need to change the PAP file also, because I am getting following error while running Script 4 : Number of residues in the alignment and the pdb files are different.
With Regards,
Bhavik

Hi,

If you have a dimer as template and want to model a dimer with the same
organisation, you just need to include a "/" character as chain breaker in
the alignment file (between your 2 monomers).

I join an exemple of alignment for a dimer.




On Thu, 12 Jun 2003, Difei Wang wrote:

> Hi, All
> 
> I am wondering if it is possible to model a dimer structure from a dimer
> template.
> I can not find anything in the manual. I tried to model each of them first and
> then
> put them together. However, I am not sure it is good or not for the packing in
> the
> contact region. Thanks for your help.
> 
> Difei
>