[modeller_usage] default optimization and refinement protocol
To:
Subject: [modeller_usage] default optimization and refinement protocol
From: CARLOS ARTURO CARVAJAL ARIAS <>
Date: Sat, 2 May 2015 09:09:42 -0500
Hello. I would like to know the parameters of the default optimization
and refinement protocol?. I mean, for a.library_schedule is
autosched.normal and a.repeat_optimization=1, but for
a.max_var_iterations, a.md_level, a.max_molpdf, what parameters are
used?
When the template has high sequence identity with the target, what
would be the recommended level of optimization and refinement?
Thanks.