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[modeller_usage] Use some local alignments

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Subject: [modeller_usage] Use some local alignments
From: fakharian <>
Date: Sat, 15 Mar 2014 14:00:53 +0330

I want to build a model for my target protein base on a known template structure. And I have some target-template local alignments. I want to use(and force) these local alignments on known regions; and align other regions of target by MODELLER alignment functions such as align2d or salign.

Can anyone suggest a method to perform this?

Thank you.

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