Re: [modeller_usage] trans proline

[Tomek Wlodarski <tomek.wlodarski AT gmail.com>]

Yes, I know.
But my template has Pro in cis conformation and in my model I would
like to have this Pro in trans.
When I do nothing I end up with structure with Pro in cis.
Thanks,
Best

tomek

On Tue, Sep 24, 2013 at 6:00 PM, Modeller Caretaker
<modeller-care@ucsf.edu> wrote:
> On 09/24/2013 09:59 AM, Tomek Wlodarski wrote:
>>
>> I found that there is routine to force Pro to cis conformation ->
>> cispeptide()
>> Is there a routine to force Pro from cis to trans conformation?
>
>
> If you don't do anything, Pro will come out in trans conformation.
>
>         Ben Webb, Modeller Caretaker
> --
> modeller-care@ucsf.edu             http://www.salilab.org/modeller/
> Modeller mail list: https://salilab.org/mailman/listinfo/modeller_usage