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[modeller_usage] Force B-hairpin loop when modelling
- To: modeller_usage@listsrv.ucsf.edu
- Subject: [modeller_usage] Force B-hairpin loop when modelling
- From: Rienk Doetjes <DoetjesRS AT cardiff.ac.uk>
- Date: Thu, 25 Oct 2012 14:33:02 +0100
Hi all!
I am working with a structure that, according to all available information I have, contains a beta hairpin loop. Whenever I use modeller to produce a homology model, this beta-hairpin will not be formed. Is there a way I can force modeller to actually generate this feature I want? Forcing the standard secondary structure does not seem to work.
Thanks,
Rienk