Re: [modeller_usage] Reading in water residues

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 9/23/12 9:28 AM, Sajeewa Pemasinghe wrote:
> so both of them use 'HETATM' . So my question is if we have asked the
> modeller to read ALL HETATM records by setting env.io.hetatm=true, do we
> have to specifically say again, to add waters by env.io.water=true.

From the manual for env.io.hetatm, at
http://salilab.org/modeller/9.11/manual/node141.html

"If set to True, then all non-water 'HETATM' records are read from PDB 
files".

So the answer to your question is: yes, you have to set 
env.io.water=True if you want to read waters.

	Ben Webb, Modeller Caretaker
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