Subject: [modeller_usage] Regarding Usage of BLOSUM Matrix
From: Ashish Runthala <>
Date: Sun, 4 Mar 2012 12:08:29 +0530 (IST)
Dear Modellers,
I simply want to study the effect of BLOSUM matrix on the alignment for a different work.
I want to choose BLOSUM45, BLODSUM80 matrices while computing the pairwise alignment.
Is there any tool or server, where such feature can be customized before computing the pairwise alignment between a templates' Chain Sequence and a target sequence.
Thanks & Regards,
Ashish
Ashish Runthala,
Lecturer, Structural Biology Cell,
Biological Sciences Group,
BITS, Pilani
Rajasthan, INDIA