I just forgot the executable!
On Tue, Jan 31, 2012 at 3:16 PM, Francesco Pietra <> wrote:
> Back to Modeller from a long absence, I am faced by a
> trivial, common issue; "no module named modeller" when running
> "fill_resid.py", which
> reads:
>
>
> from modeller import *
> from modeller.automodel import * # Load the automodel class
>
> long.verbose()
> env = environ()
>
> # directories for input atom files
> env.io.atom_files_directory = ['.', '../atom_files']
>
> a = loopmodel(env, alnfile = 'alignment.ali',
> knowns = 'my, sequence = 'my_fill')
> a.starting_model= 1
> a.ending_model = 1
>
> a.loop.starting_model = 1
> a.loop.ending_model = 2
> a.loop.md_level = refine.fast
>
> a.make()
>
>
> fill_resid.py, my.pdb, and alignement.ali are in the same dworking directory
>
>
> (My aim is to fill lacking residues in ltwo loops of a protein)
> The software is correctly installed in debian amd64:
>
> francesco@gig64:~$ which mod9.10
> /usr/bin/mod9.10
> francesco@gig64:~$
>
>
> Thanks for advice
> francesco pietra
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