[modeller_usage] Need help regarding alteration of align2d.py parameters

[Ashish Runthala <ashishr AT bits-pilani.ac.in>]

Dear Modellers,
Align2d.py the pairwise alignment is not working i want it to. Will somebody please tell me where are the options to change the considered score matrix and other gap based parameters.

Thanks
Ashish



Ashish Runthala,
Lecturer, Structural Biology Cell,
Biological Sciences Group,
BITS, Pilani
Rajasthan, INDIA