Re: [modeller_usage] modelling coordinate of missing residues

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 4/25/11 11:49 PM, Sangita Kachhap wrote:
> I have a pdb file and coordinate of 13 amino acid (N-terminal arm)are missing in
> this pdb file.
>
> Is it possible to generate coordinte of these missing residue?

Sure; see http://salilab.org/modeller/wiki/Missing%20residues

However, the coordinates are unlikely to be correct, since your missing 
residues are at the terminus. Since only one end is anchored, there's a 
lot of conformational space to explore. Thus, I would suggest you build 
a model without this terminal region.

	Ben Webb, Modeller Caretaker
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