Re: [modeller_usage] Loop modeling

[Modeller Caretaker <modeller-care@ucsf.edu>]

On 01/27/2011 06:22 AM, bharat lal wrote:
> I have modelled a protein using secondary structure restrained script...
> The model seems to be perfectly fine .. but one portion of the model is
> converted into a helix which has to be a loop according to the template
> .. how can I force that region to be a loop ???

You can't *force* it, but if you unalign the target and template in this 
region, loop/coil is the most likely secondary structure you'll end up 
with. See
http://salilab.org/archives/modeller_usage/2009/msg00170.html

	Ben Webb, Modeller Caretaker
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