On 08/29/2010 02:09 PM, wrote:
Hi all,
suppose I have the following simple "dummy" py-modeller script:
from modeller import *
from modeller.automodel import *
log.verbose()
env = environ()
env.io.atom_files_directory = '<path to pdb>' # containing d1f0la3.pdb
a = automodel(env,
alnfile = '<my_pir_file.pir>', # alignment filename
knowns = 'd1f0la3', # codes of the templates
sequence ='d1f0la3') # code of the target
Align codes (the thing after the >P1;) have to be unique. Change your alignment file and Python script accordingly (e.g. you can call the sequence d1f0la3-1 and the structure d1f01la3-2).
Ben Webb, Modeller Caretaker
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