Hello Albert,
On Tue, 06 Jul 2010 22:56:37 +0800 (CST) albert <> wrote:
> Hello:
> I am running modeller job by "python model-parall.py" based on the
> following scrips. But it is said in the termial which seems that modeller
> coundn't find the template pdb file. However, my template pdb file is
> already in the same working directory which named pt6A.pdb. I don't why it
> said couldn't find it. Would you please give me some advices?
<snip>
> Protein specified in ALIGN_CODES(i) was not found in the alignment file;
> ALIGN_CODES( 1) = pt6
I think if you reread the error message you will see that it does not say
that it cannot find the pdb file, but says that the template that you have
called "pt6" is not present in the alignment file a8-pt6.ali. It appears
that your alignment file does not match your script. Perhaps you labelled
the sequence PT6 instead of pt6 (or something else)?
Cheers,
Rob
--
Robert L. Campbell, Ph.D.
Senior Research Associate/Adjunct Assistant Professor
Botterell Hall Rm 644
Department of Biochemistry, Queen's University,
Kingston, ON K7L 3N6 Canada
Tel: 613-533-6821 Fax: 613-533-2497
<> http://pldserver1.biochem.queensu.ca/~rlc