[modeller_usage] R: [Fwd: to model only specific region]

[Marco <>]

Well, I'm not the most expert but if residues are missing they probably belong to a loop thus they probably don't have a fixed structure...

Bye
Marco


--- Mar 18/5/10, Nicee <> ha scritto:

> Da: Nicee <>
> Oggetto: [modeller_usage] [Fwd: to model only specific region]
> A: 
> Data: Martedì 18 maggio 2010, 12:39
> -------------------------------
> Original Message -------------------------------
> Subject: to model only specific region
> From:    "Nicee" <>
> Date:    Tue, May 18, 2010 3:32 pm
> To:      
> --------------------------------------------------------------------------------
> 
> Hello all,
> 
> I have a pdb file(pdb1.pdb) which is having some missing
> residues like from 89
> to 96 and 137 to 141,etc. I wish to model only this missing
> region such that
> rest of the structure remains the same as in the initial
> pdb(pdb1.pdb). I have
> searched a template(pdb2.pdb) having 64% identity with
> sequence(seq1)of pdb1. Is
> it possible to model the missing residues using pdb2 as
> template but the
> remaining portion of pdb1 remains the same. Kindly
> help.Eagerly witing for
> response.
> Thanking you.
> 
> With regards,
> Nicee.
> 
> 
> 
> 
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