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Re: [modeller_usage] how to treat an unaligned 46-amino acid long insertion
- To: Thomas Evangelidis <tevang3 AT gmail.com>
- Subject: Re: [modeller_usage] how to treat an unaligned 46-amino acid long insertion
- From: Modeller Caretaker <modeller-care@ucsf.edu>
- Date: Tue, 16 Feb 2010 11:23:21 -0800
- Cc: modeller_usage@listsrv.ucsf.edu
On 02/14/2010 06:03 PM, Thomas Evangelidis wrote:
what's the best way to refine the structure of a 46 amino acid long
insertion which is not aligned with any of the templates?
Modeller does comparative modeling, so it needs a template for that
region. If you can't find another template that has detectable
similarity to your sequence in that region, you can choose not to model
that part of the structure.
Ben Webb, Modeller Caretaker
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