[modeller_usage] question about Modeling with cryo-EM compare.

[Knut J Bjuland <>]

When you read the second part of this tutorial at http://salilab.org/modeller/ncmi_2008/select.html. How do you read this table, or is there any function in modeller that use the table and output sequence identity.

Sequence identity comparison (ID_TABLE):

   Diagonal       ... number of residues;
   Upper triangle ... number of identical residues;
   Lower triangle ... % sequence identity, id/min(length).

         1b8pA @11y7tA @11civA @25mdhA @27mdhA @23d5tA @21smkA @2
1b8pA @1      327     201     146     152     152     249      50
1y7tA @1       61     327     158     170     160     210      58
1civA @2       45      48     374     140     304     148      55
5mdhA @2       46      52      42     333     140     164      58
7mdhA @2       46      49      87      42     351     148      50
3d5tA @2       78      65      46      51      46     321      50
1smkA @2       16      19      18      19      16      16     313

I am not able to read the this table manually and I can not see how I can extract sequence_identity from it.

Best regards
Knut J

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