Subject: Re: [modeller_usage] resuming a crashed job
From: Modeller Caretaker <>
Date: Thu, 02 Jul 2009 08:18:59 -0700
Cc:
Søren Skovstrup Hansen wrote:
> A very simple question: Is it possible to resume a crashed Modeller job?
> I was running a more or less standard automodel job, but my computer
> crashed after building 200 out of 250 models. Hence, is it possible to
> resume this job and thereby evaluating and ranking all 250 build models
> via e.g. the DOPE score?
There is no automatic method. To get the remaining 50 models, you could
simply modify your Python script and rerun it (set
a.starting_model=201). You can extract the DOPE scores from the logfile
of the original run - but if you don't have that, you can recalculate
the scores using a script similar to that at
http://salilab.org/modeller/9v7/manual/node242.html
Ben Webb, Modeller Caretaker
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