[modeller_usage] _modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = 1CPG

[DANIEL TAYLOR <daniel180 AT btinternet.com>]

Hello People

I know this has been raised before but when looking through the archieves I could'nt find an answer to this problem, I've redone all the tutorials and out of ideas, so please can somebody help with this error message I'm getting?

'import site' failed; use -v for traceback
Traceback (most recent call last):
  File "modeller.top.py", line 18, in ?
    a.make()                            # do the actual homology modeling
  File "/home/fraizerangus/bin/modeller9v2/modlib/modeller/automodel/automodel.py", line 99, in make
    self.homcsr(exit_stage)
  File "/home/fraizerangus/bin/modeller9v2/modlib/modeller/automodel/automodel.py", line 399, in homcsr
    aln = self.read_alignment()
  File
 "/home/fraizerangus/bin/modeller9v2/modlib/modeller/automodel/automodel.py", line 389, in read_alignment
    aln.append(file=self.alnfile, align_codes=self.knowns+[self.sequence])
  File "/home/fraizerangus/bin/modeller9v2/modlib/modeller/alignment.py", line 74, in append
    rewind_file, close_file)
_modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES(       1) =  1CPG

Many Thanks

Dan