[Date Prev][Date Next][Thread Prev][Thread Next][Date Index][Thread Index]
[modeller_usage] align_codes error
- To: modeller_usage@listsrv.ucsf.edu
- Subject: [modeller_usage] align_codes error
- From: Dave Roe <roex0050 AT umn.edu>
- Date: Mon, 10 Sep 2007 11:29:41 -0500
I'm receiving the following error on linux with Modeller 9.2:
_modeller.error: read_al_373E> Protein specified in ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES( 1) = mod2hg42
Here's the alignment line from my python file:
aln = alignment(env, file='mod2hg42.fa', align_codes=('mod2hg42'))
Here's the contents of mod2hg42.fa (located in the same directory):
>mod2hg42
EEKLRRYLKRTVTELDSVTARLREVEHRAGEPIAIVGXACRFPGDVDSPESFWEFVSGGGDAIAEAPADRGWEPD
PDARLGGXLAAAGDFDAGFFGISPREALNXDPQQRIXLEISWEALERAGHDPVSLRGSATGVYTGSSTNDYGFLA
VSDPDEAHPYAITGTASSVASGRVAYCLGLEGPAXTVDTACSSSLTALHLAXESLRRDECGLALAGGVNVLSTPM
VTLGFDSQGGLAADGRIKPFSKAADGYTRSEGAGVLVLQRLSAARREGRPVLAVLRGSAVNQDGASNGLIAPSGP
AQQRVIRRALENAGVRAGDVDYVEAHGTGTRLGDPIEVHALLSTYGAERDPDDPLWIGAVKTNVGHLESAAGVAG
VXKAVLALRHGEXPRTLHFDEPSPQIEWAVSVVSQARSWPAGERPRRAGVSSFGFGGTNAHVIVEEAPEADEPV
I've tried dozens of combinations, but I can't get around this error. Any
advice?
--
Dave Roe roex0050 AT umn.edu