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Re: [modeller_usage] using multiple template in Modeller9v1

 wrote:

I am new to modeller and I have trouble creating a homology model of a
protein using multiple template. During making model,it appares model error,
structure not read in.I would appreciate it if any one can give me any
suggestion.
Thanks!
log file:
runcmd______> alignment.append(align_codes=['1u19', '1PFC', '1BGY', '1AVQ',
'1ARP', 'ccr'], atom_files=[], file='multiccr.ali', (def)remove_gaps=True,
(def)alignment_format='PIR', (def)rewind_file=False, (def)close_file=True)
readlinef__W> File: 1u19.pdb, Line: 1371
              Modeller will only read the first 80 characters of this line.
readlinef__W> File: 1u19.pdb, Line: 1371
              Modeller will only read the first 80 characters of this line.
read_pd_702E> File: 1u19.pdb, Line    1371
              Could not parse data from file; file is probably corrupt.
read_te_288W> Protein not accepted:        1  1u19
rdabrk__337E> Structure not read in (please consult the log file
              for more details):
The error says that your PDB file is corrupt. What does line 1371 of 1u19.pdb look like? 

	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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