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Re: [modeller_usage] homodimer modelling

drugdesign wrote:

I need to model a homodimer from a homodimer templare. How my
alignment file must look like? I mean I have  problems with
aminoacids numbers and chain names. How to solve this problems? I've
attached all input files. Do I need to rename and renumber sequence
or I can complete the task without it?


Your alignment is fine - all you need to do is add the starting and
ending residue numbers and chain IDs, i.e. change the existing header:

>P1;mfzd
structureX:mfzd:::::undefined:undefined:1.35:0.225

to

>P1;mfzd
structureX:mfzd:5:A:126:B:undefined:undefined:1.35:0.225


	Ben Webb, Modeller Caretaker
--
             http://www.salilab.org/modeller/
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