Re: [modeller_usage] dope energy of template

[Modeller Caretaker <modeller-care@ucsf.edu>]

caj wrote:
> The evaluate-model.py was used for a few of my models but I would like 
> to compare the DOPE energies to my template and where do I find that 
> data-set? Hope it is not too obvious....

Yes, that should be straightforward. Just read in the template 
structure, and then do the DOPE assessment. See the example at 
http://salilab.org/modeller/manual/node151.html - just replace the last 
two lines with 'mdl.assess_dope()'.

However, note that DOPE is protein size dependent, and so scores for 
different proteins cannot be directly compared. See 
http://salilab.org/modeller/manual/node156.html

	Ben Webb, Modeller Caretaker
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