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[modeller_usage] GA341/DOPE/MolPDF which one for model selection?
- To: modeller_usage@listsrv.ucsf.edu
- Subject: [modeller_usage] GA341/DOPE/MolPDF which one for model selection?
- From: Yun He <jarod AT nlbmol.ibp.ac.cn>
- Date: Mon, 22 May 2006 17:58:19 +0800
- Organization: Institute of Biophysics Chinese Academy of Sciences
- Reply-to: jarod AT spg.biosci.tsinghua.edu.cn
Hi, everybody,
Currently, I am working on a model based on a very low sequence-identity
template (about 13%). I use an alignment to produce 30 models, and then I
sort these models by their molpdf or GA341 or DOPE. However, the sorts turn
out very different results, some models with higher GA341 scores takes higher
DOPE scores. I am confused, which one should I choose?
Jarod