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[modeller_usage] How to make models from multiple sequences e.g an entire proteome

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Subject: [modeller_usage] How to make models from multiple sequences e.g an entire proteome
From: "Antony" <>
Date: Mon, 13 Feb 2006 16:09:54 +0900

I would like to obtain models of the entire Saccharomyces cerevisiae proteome in order to predict DNA binding proteins using structural information. How can I use modeller to quickly make a model for each protein sequence (6,702 in all)?

I believe the models are already available in the Yeast SGD1 dataset but I can only view 500 models. Is there a way I can obtain all the structure files (preferrablyPDB format)?

Please help

Tonyngahu.

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