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Re: [modeller_usage] alignment matrix
- To: "Schulze, Diana" <dschulze AT ipb-halle.de>
- Subject: Re: [modeller_usage] alignment matrix
- From: Modeller Caretaker <modeller-care@ucsf.edu>
- Date: Mon, 30 Jan 2006 10:52:18 -0800
- Cc: modeller_usage@listsrv.ucsf.edu
Schulze, Diana wrote:
I made a model with modeller and used the function auto_align() to get
an automatic alignment. Now my question is the following: How can I find
out which matrix (BLOSOM 60,...) was used to build this alignment?
By default, if you don't set rr_file, the sequence alignments (align and
malign) used by auto_align() use the AS1 matrix.
Ben Webb, Modeller Caretaker
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