wrote:
I have a tetramer model generated by MODELLER 8v1. I want to redefine one 10-residue long loop on all four subunit. Unfortunately MODLLER only worked on one of the chaines. My question is how I can model the identical-residue loop on all chains at one calculation?
You should only use 'INITIALIZE' for the first call to pick_atoms. All subsequent calls should use 'ADD' instead.
Ben Webb, Modeller Caretaker -- http://www.salilab.org/modeller/ Modeller mail list: http://salilab.org/mailman/listinfo/modeller_usage