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Re: [modeller_usage] alignment file?

Rozana Othman wrote:

What does: " _modeller.error: read_al_373E> Protein specified in
ALIGN_CODES(i) was not found in the alignment file; ALIGN_CODES(
1) =  1jxp " mean? The code for my template is 1jxp.
Like it says - your alignment file does not have the 1jxp sequence in it. See http://salilab.org/modeller/manual/node175.html for the PIR file format; you should have a sequence starting with ">P1;1jxp" somewhere in your PIR file. 

	Ben Webb, Modeller Caretaker
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