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Hi,
Im trying to make an alignment, but i receive an
error:
Kind, OS, HostName, Kernel, Processor: 4, SunOS
caprichosa 5.8 sun4u
Date and time of compilation : 09/12/2004 21:16:03 Job starting time (YY/MM/DD HH:MM:SS): 2004/12/07 11:29:11.627 rdactio_534E> Command not recognized:
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1 Dynamically allocated memory
at finish
[B,kB,MB]:
56755 55.4
25 0.054 Starting time : 2004/12/07 11:29:11.6 27 Closing time : 2004/12/07 11:29:13.0 97 Total CPU time [seconds] : 0.00 The .seq is:
>P1;03883 sequence:03883: : : 696 : :::-1.00:-1.00 -MMARKFELKDYRNIGIMAHIDAGKTTTTERILFHTGKIHKIGETHDGVSQMDWMEQEKERGITITSAATTAFWK GKRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAQSGVEPQTETVWRQATNYSVPRIVYVNKMDKAGANFEASI ESVRTKLNGNAVAIQLNIGAEADFSGLIDLVEMKAYNYDGQKEEIEYEIPIPEDLFEKASQMRLALAEAVADYDE and so go....... >P1;1KTV structureX:1KTV: 1 :B : 691 :B : Elongation Factor G: The MAVKVEYDLKRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWK DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVI and so go.....
And the align2d.top is: INCLUDE READ_MODEL FILE = '1KTV' SEQUENCE_TO_ALI ALIGN_CODES = '1KTV' READ_ALIGNMENT FILE = '03883.seq', ALIGN_CODES = ALIGN_CODES '03883', ADD_SEQUENCE = on ALIGN2D WRITE_ALIGNMENT FILE='03883-KTV.ali', ALIGNMENT_FORMAT = 'PIR' WRITE_ALIGNMENT FILE='03883-KTV.pap', ALIGNMENT_FORMAT = 'PAP'
Whats wrong????
Thank you very much |