Re: [modeller_usage] Hard limits for size of sequence database
To:
Subject: Re: [modeller_usage] Hard limits for size of sequence database
From: J B Procter <>
Date: Thu, 7 Oct 2004 18:24:55 +0200
Organization: Zentrum Fuer Bioinformatik
Reply-to:
On Wed, 6 Oct 2004 10:37:57 -0700
Modeller Caretaker <> wrote:
> > Input/Output Error 192: Record too large
>
> No, but there is a maximum size for a 'record', which translates to
> the line length. There appears to be no way round this in Fortran,
I should have remembered that :-)
> short of ditching formatted IO entirely. Modeller uses a maximum line
> length of 16384 characters, which I guess used to be 'long enough for
> everyone', but some of the NR database IDs end up being longer than
> this, if many corrections have been made.
I see - not something you notice with the way that ?blast truncates the
id line to three or so rows in its output. The perl script has been
written....
Thanks!
j.
_______________________________________________________________________
Dr JB Procter:Biomolecular Modelling at ZBH - Center for Bioinformatics
Hamburg http://www.zbh.uni-hamburg.de/staff.php