[modeller_usage] Problem with alignment file

[柳田 亮 <>]

Please help me.  I cannot figure out  this error.

--

                         MODELLER 7v7, Sep 12, 2004 09:15pm

Kind, OS, HostName, Kernel, Processor: 4, Darwin  7.5.0 Power Macintosh
Date and time of compilation         : 09/14/2004 09:31:49
Job starting time (YY/MM/DD HH:MM:SS): 2004/09/17  20:55:55.058

TOP_________>   109  749 SET ALNFILE  = 'align.txt'

TOP_________>   110  750 SET KNOWNS   = '1stc'

TOP_________>   111  751 SET SEQUENCE = 'pkcAcat'

TOP_________>   112  752 SET ATOM_FILES_DIRECTORY = './'

TOP_________>   113  753 SET STARTING_MODEL = 1

TOP_________>   114  754 SET ENDING_MODEL  = 1

TOP_________>   115  755 SET HETATM_IO = ON

TOP_________>   116  756 CALL ROUTINE = 'model'

TOP_________>   117  419 CALL ROUTINE = 'getnames'

TOP_________>   118  534 STRING_IF STRING_ARGUMENTS = MODEL 
'undefined', OPERATION;
                       = 'EQ', THEN =     'STRING_OPERATE OPERATION = 
CONCATENA;
                      TE, STRING_ARGUMENTS = SEQUENCE .ini, RESULT = 
MODEL'

TOP_________>   119  535 STRING_IF STRING_ARGUMENTS = CSRFILE 
'undefined', OPERATI;
                      ON = 'EQ', THEN =     'STRING_OPERATE OPERATION = 
CONCATE;
                      NATE, STRING_ARGUMENTS = SEQUENCE .rsr,  RESULT = 
CSRFILE;
                      '

TOP_________>   120  536 STRING_OPERATE OPERATION = 'CONCATENATE',      
          ;
                         STRING_ARGUMENTS = SEQUENCE '.sch',  RESULT = 
SCHFILE

TOP_________>   121  537 STRING_OPERATE OPERATION = 'CONCATENATE',      
          ;
                        STRING_ARGUMENTS = SEQUENCE '.mat',  RESULT = 
MATRIX_FI;
                      LE

TOP_________>   122  538 SET ROOT_NAME = SEQUENCE

TOP_________>   123  539 RETURN

TOP_________>   124  420 CALL ROUTINE = 'homcsr'

TOP_________>   125  112 READ_ALIGNMENT FILE = ALNFILE, ALIGN_CODES = 
KNOWNS SEQUE;
                      NCE


Dynamically allocated memory at         amaxseq [B,kB,MB]:        84067 
     82.097     0.080
openf5__224_> Open       20  OLD  SEQUENTIAL  align.txt
rdpir___270E> Error reading/processing file:  align.txt
recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1       1

Dynamically allocated memory at          finish [B,kB,MB]:        84067 
     82.097     0.080
Starting time                                            : 2004/09/17  
20:55:55.058
Closing time                                             : 2004/09/17  
20:55:57.131
Total CPU time [seconds]                                 :       1.88

--
>P1;1stc
structureX:1stc:15::350:::::
GNAAAAKKGSEQESVKEFLAKAKEDFLKKWESPAQNTAHLD-----QFERIKTLGTGSFG
RVMLVKHKETGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVN-FPFLVKLEFSFKDNS
NLYMVMEYVPGGEMFSHLRRIGRFSEPHARFYAAQIVLTFEYLHSLDLIYRDLKPENLLI
DQQGYIQVTDFGFAKRVKGR---TWTLCGTPEYLAPEIILSKGYNKAVDWWALGVLIYEM
AAGYPPFFADQPIQIYEKIVSGKVRFPSHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDI
KNHKWFATTDWIAIYQRKVEAPFIPKFKGPGDTSNFDDYEEE-------EIRVSINEKCG
KEFSEF*


>P1;pkcAcat
sequence:pkcAcat:1::336:::::
EGDEEGNMELRQKFEKAKLGPAGNKVISPSEDRKQPSNNLDRVKLTDFNFLMVLGKGSFG
KVMLADRKGTEELYAIKILKKDVVIQDDDVECTMVEKRVLALLDKPPFLTQLHSCFQTVD
RLYFVMEYVNGGDLMYHIQQVGKFKEPQAVFYAAEISIGLFFLHKRGIIYRDLKLDNVML
DSEGHIKIADFGMCKEHMMDGVTTRTFCGTPDYIAPEIIAYQPYGKSVDWWAYGVLLYEM
LAGQPPFDGEDEDELFQSIMEHNVSYPKSLSKEAVSICKGLMTKHPAKRLGCGPEGERDV
REHAFFRRIDWEKLENREIQPPFKPKVCGKG-AENFDKFFTRGQPVLTPPDQLVIANIDQ
SDFEGF*