check it out whether your protein contains any segment name ,since it is missing in alignment file, since 0 residue number in pdb and message of protein not accepted indicates there is a problem in pdb format ,change the format such as ent or pdb and try again and also let me know what happened...(don't use atom format)
B.Nataraj
"Chaitanya Reddy.A" <> wrote:
Dear all, We are modelling a molecule but we are facing a problem to which i am unable to find it. We hope you can help me in this regard. We want to model a map kinase 8 using the map kinase 10 molecule which shows 93% homology. We aligned using clustalx and we submitted to modeller as .ali file.
Below is the alignment file we obtained from clustalx
After submitting to modeller, the following is the error..
The error message
rdabrk__288W> Protein not accepted: 1 rdabrk__290E> Number of residues in the alignment and pdb files are different: 346 0 For alignment entry: 1 recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
Please help me in solving this problem.
But we manually examined the number of residues in both pdb files and alignment files and we found no
difference.
Regards Chaitu
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