Re: [modeller_usage] karthik.

Dear anjaneyulu,

Check it out whether your file ' dd.ali' available in your working directory, or you named it something different . For more let me know I will help you..

Best wishes,

B.Nataraj

kambhampati anjaneyulu <> wrote:

sir when i run modeller .it is showing error .how to run the modeller successfully

     Copyright(c) 1989-2002 Andrej Sali
                            All Rights Reserved

                            Written by A. Sali
          with help from A. Fiser, R. Sanchez, M.A. Marti-Renom,
                   B. Jerkovic, A. Badretdinov, F. Melo,
                       J.P. Overington & E. Feyfant
                   Rockefeller University, New York, USA
                     Harvard University, Cambridge, USA
                 Imperial Cancer Research Fund, London, UK
             Birkbeck College, University of London, London, UK

Kind, OS, HostName, Kernel, Processor: 4, Windows_NT SSEDS x86 Family 15 Model 1
Stepping 3, GenuineIn
Date and time of compilation         : Jul 09 2002 16:21:30
Job starting time (YY/MM/DD HH:MM:SS): 2004/04/10 19:43:40.686

TOP_________>   105 705 SET ALNFILE = 'dd.ali'

TOP_________>   106 706 SET KNOWNS   = '1FFT'

TOP_________>   107 707 SET SEQUENCE = '1EKH'

TOP_________>   108 708 SET ATOM_FILES_DIRECTORY = './:../atom_files'

TOP_________>   109 709 SET STARTING_MODEL = 1

TOP_________>   110 710 SET ENDING_MODEL = 1

TOP_________>   111 711 CALL ROUTINE = 'model'

TOP_________>   112 399 CALL ROUTINE = 'getnames'

TOP_________>   113 509 STRING_IF STRING_ARGUMENTS = MODEL 'undefined', OPERATI
ON;
                       = 'EQ', THEN =     'STRING_OPERATE OPERATION = CONCATENA;

                      TE, STRING_ARGUMENTS = SEQUENCE .ini, RESULT = MODEL'

TOP_________>   114 510 STRING_IF STRING_ARGUMENTS = CSRFILE 'undefined', OPERA
TI;
                      ON = 'EQ', THEN =     'STRING_OPERATE OPERATION = CONCATE;

                      NATE, STRING_ARGUMENTS = SEQUENCE .rsr, RESULT = CSRFILE;

                      '

TOP_________>   115 511 STRING_OPERATE OPERATION = 'CONCATENATE',
;
                         STRING_ARGUMENTS = SEQUENCE '.sch', RESULT = SCHFILE

TOP_________>   116 512 STRING_OPERATE OPERATION = 'CONCATENATE',
;
                        STRING_ARGUMENTS = SEQUENCE '.mat', RESULT = MATRIX_FI;

                      LE

TOP_________>   117 513 SET ROOT_NAME = SEQUENCE

TOP_________>   118 514 RETURN

TOP_________>   119 400 CALL ROUTINE = 'homcsr'

TOP_________>   120 106 READ_ALIGNMENT FILE = ALNFILE, ALIGN_CODES = KNOWNS SEQ
UE;
                      NCE

Dynamically allocated memory at         amaxseq [B,kB,MB]:      2205269    2153.
583     2.103
fullfn__230E> File not found: dd.ali
              Directories:
              Extensions : :.ali
              Prefixes   : nothing, pdb
recover____E> ERROR_STATUS >= STOP_ON_ERROR:        1       1

Dynamically allocated memory at          finish [B,kB,MB]:      2205269    2153.
583     2.103
Starting time                                            : 2004/04/10 19:43:40.
686
Closing time                                             : 2004/04/10 19:43:42.
530
Total CPU time [seconds]                                 :       1.72

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