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RE: complex

Thijs,

One way to do this is by including a "/" to indicate a chain break in your
target sequence and using two templates to align the different parts of the
complex.

Eswar 

-----Original Message-----
From: owner-modeller_usage@listsrv.ucsf.edu
[mailto:owner-modeller_usage@listsrv.ucsf.edu] On Behalf Of Thijs Beuming
Sent: Thursday, July 10, 2003 4:55 PM
To: modeller_usage@listsrv.ucsf.edu
Subject: complex

Dear all,

Can anyone tell me if (and how) it is possible to model a protein 
complex in Modeller? How do I tell Modeller that the two proteins are 
not connected?

Thanks,

Thijs Beuming