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My .top file is:
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INCLUDE
SET OUTPUT_CONTROL = 1 1 1 1 1
SET SEARCH_RANDOMIZATIONS = 3 SET FILE = 'TvLDH.ali' SEQUENCE_SEARCH ALIGN_CODES = 'TvLDH', DATA_FILE = ON -----------------------------------------------------------------------------------------------------------------
the log file is:
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MODELLER 6v2, 17 Feb 2002
PROTEIN STRUCTURE
MODELLING BY SATISFACTION OF SPATIAL RESTRAINTS
Copyright(c) 1989-2002 Andrej Sali All Rights Reserved Written by A. Sali with help from A. Fiser, R. Sanchez, M.A. Marti-Renom, B. Jerkovic, A. Badretdinov, F. Melo, J.P. Overington & E. Feyfant Rockefeller University, New York, USA Harvard University, Cambridge, USA Imperial Cancer Research Fund, London, UK Birkbeck College, University of London, London, UK Kind, OS, HostName, Kernel, Processor: 4, Linux bioinf4 2.4.4-4GB i686 Date and time of compilation : 05/24/2002 09:27:23 Job starting time (YY/MM/DD HH:MM:SS): 2002/09/23 15:16:01.528 TOP_________> 105 705 SET SEARCH_RANDOMIZATIONS = 3
TOP_________> 106 706 SET FILE = 'TvLDH.ali' TOP_________> 107 707 SEQUENCE_SEARCH ALIGN_CODES = 'TvLDH', DATA_FILE = ON openf5__224_> Open 11 OLD SEQUENTIAL ${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod Dynamically allocated memory
at amaxchn
[B,kB,MB]: 2306323
2252.269 2.199
openf5__224_> Open 11 OLD SEQUENTIAL ${MODINSTALL6v2}/modlib//CHAINS_3.0_40_XN.cod openf5__224_> Open 11 OLD SEQUENTIAL ${MODINSTALL6v2}/modlib//CHAINS_all.seq Dynamically allocated memory
at amresdb
[B,kB,MB]: 5689471
5556.124 5.426
openf5__224_> Open 11 OLD SEQUENTIAL ${MODINSTALL6v2}/modlib//CHAINS_all.seq Dynamically allocated memory
at amaxseq
[B,kB,MB]: 5877209
5739.462 5.605
Dynamically allocated memory
at amaxbnd
[B,kB,MB]: 110299725 107714.600
105.190
openf5__224_> Open 11 OLD SEQUENTIAL ${MODINSTALL6v2}/modlib//as1.sim.mat rdrrwgh_268_> Number of residue types: 20 openf5__224_> Open 11 OLD SEQUENTIAL TvLDH.ali ---------------------------------------------------------------------------------------------------------------------------------------------------------------
After 2 hours of executing delivery the following mistake
The error is:
/usr/local/modeller6v2/bin/mod6v2 : line38 : 2030 terminated
$NICE ${EXECUTABLE} $STEERF
>$LOGF
WHAT IS A PROBLEM???
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