Why MODERLLER6v2 cannot recognize these Variables?
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Subject: Why MODERLLER6v2 cannot recognize these Variables?
From: Lesheng Kong <>
Date: Wed, 31 Jul 2002 14:13:24 +0800
Organization: NUS
Reply-to:
Hi,
When do modeling, I got the following error message:
assgn___544E> Variable name not recognized: MODEL_TOPOLOGY
Command line: SET MODEL_TOPOLOGY = 1, HYDROGEN_IO = ON, HETATM_IO =ON, WATER_IO = ON
assgn___525E> Error in TOP variable assignment.
assgn___544E> Variable name not recognized: TOPOLOGY_LIBRARY
Command line: SET TOPOLOGY_LIBRARY = $(LIB)/TOP.LIB
assgn___525E> Error in TOP variable assignment.
assgn___544E> Variable name not recognized: PARAMETERS_LIBRARY
Command line: SET PARAMETERS_LIBRARY = $(LIB)/PAR.LIB
assgn___525E> Error in TOP variable assignment.
compile_563E> Please correct the errors reported above and rerun MODELLER.
recover____E> ERROR_STATUS >= STOP_ON_ERROR: 1 1
But I follow FAQ 15, why MODERLLER6v2 cannot recognize these Variables?
Is it possible that my installation has problems?
Thank you very much!
Kong Lesheng
My model.top:
INCLUDE
SET OUTPUT_CONTROL = 1 1 1 1 1
SET ALNFILE = '1TCH-1TCG.ali'
SET KNOWNS = '1TCH'
SET SEQUENCE = '1TCG'
SET ATOM_FILES_DIRECTORY = './:../atom_files'
SET STARTING_MODEL = 1
SET ENDING_MODEL = 5
SET MODEL_TOPOLOGY = 1, HYDROGEN_IO = ON, HETATM_IO=ON, WATER_IO = ON
SET TOPOLOGY_LIBRARY = $(LIB)/top.lib
SET PARAMETERS_LIBRARY = $(LIB)/par.lib
CALL ROUTINE = 'model'