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Modelling post trans mods
- To: modeller_usage@listsrv.ucsf.edu
- Subject: Modelling post trans mods
- From: "J Simms" <JXS818 AT bham.ac.uk>
- Date: Tue, 11 Jun 2002 10:32:27 +0100
- Organization: The University of Birmingham
Hi All,
I have just started modelling a G Protein-Coupled Receptor,
which has a number of post translational modifications. My
problem is that my template, Rhodopsin, is glycosylated on the
extracellular loops at a different position to my target sequence.
Is there a way of adding the glycosylation to my target protein
either at the alignment stage or before the model in refined.
As always many thanks in advance.
John.