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Which loop energy?
- To: modeller_usage@listsrv.ucsf.edu
- Subject: Which loop energy?
- From: "J Simms" <JXS818 AT bham.ac.uk>
- Date: Thu, 30 May 2002 09:22:14 +0100
- Organization: The University of Birmingham
Hi all,
I have recently started to model GPCRs, but as with everyone
else I am having trouble with the loops. I have followed the tutorials
, kindly given, and have resulted with a number of files with different
loops starting and ending in different locations. I have investingated
the log files for energy terms, as I understand it the loop model with
the lowest energy term is a good starting point. My problem which
energy term in the log file do I use, as there seems to be a number
of energy terms even for the same loop model number.
> Many thanks for any help
> John
>