Dear friends,
The bottom is my ali file.The template has 267 residues in A-chain and
267
residues in B-chain.After 267th residue in the template .atm file two
heteroatoms are there.
I want to include that heteroatoms in my target protein(omp).
say that heteroatoms start with 601 and 602 after 267th residue of B-chain
how can i include in this line:
>P1;xxx structureX:1dqx: 1 :A: 267 :B: 1 : 267 : 2.10:99.90
So, that it takes that heteroatoms and include that in target protein.
If i try to do like this
>P1;xxx structureX:1dqx: 1 :A: 267 :B: 1 : 267 : : 601 : 602 : 2.10:99.90
it says residue index out of bounds.
please suggest me solution for this.
>P1;xxx structureX:xxx: 1 :A: 267 :B: 1 : 267 : 2.10:99.90
MHKATYKERAATHPSPVAAKLFNIMHEKQTNLCASLDVRTTKELLELVEALGPKICLLKT
HVDILTDFSMEGTVKPLKALSAK--YNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADI
TNAHGVVGPGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGEYTKGTVDIAKSDKDF
VIGFIAQRDMGGRDEGYDWLIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLF
AKGRDAKVEGERYRKAG-WEAYLRRCGQQD----/MHKATYKERAATHPSPVAAKLFNIM
HEKQTNLCASLDVRTTKELLELVEALGPKICLLKTHVDILTDFSMEGTVKPLKALSAK--
YNFLLFEDRKFADIGNTVKLQYSAGVYRIAEWADITNAHGVVGPGIVSGLKQAAEEVTKE
PRGLLMLAELSCKGSLSTGEYTKGTVDIAKSDKDFVIGFIAQRDMGGRDEGYDWLIMTPG
VGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDAKVEGERYRKAG-WEAYLRR
CGQQD----/..*
>P1;omp
MTGFGLRLAEAKARRGPLCLGIDPHPELLRGWDLATTADGLAAFCDICVRAFADFAVVKP
QVAFFESYGAAGFAVLERTIAELRAADVLVLADAKRGDIGATMSAYATAWVGDSPLAADA
VTASPYLGFGSLRPLLEVAAAHGRGVFVLAATSNPEGAAVQNAAADGRSVAQLVVDQVGA
ANEAAGPGPGSIGVVVGATAPQAPDLSAFTGPVLVPGVGVQGGRPEALGGLGGAASSQLL
PAVAREVLRAGPGVPELRAAGERMRDAVAYLAAV/MTGFGLRLAEAKARRGPLCLGIDPH
PELLRGWDLATTADGLAAFCDICVRAFADFAVVKPQVAFFESYGAAGFAVLERTIAELRA
ADVLVLADAKRGDIGATMSAYATAWVGDSPLAADAVTASPYLGFGSLRPLLEVAAAHGRG
VFVLAATSNPEGAAVQNAAADGRSVAQLVVDQVGAANEAAGPGPGSIGVVVGATAPQAPD
LSAFTGPVLVPGVGVQGGRPEALGGLGGAASSQLLPAVAREVLRAGPGVPELRAAGERMR
DAVAYLAAV/..*