oligomers

[Dr Nicolas Le Novere <nl223 AT cus.cam.ac.uk>]

Dear modellers,

My template is a homooligomer. I would like to model similar oligomers
either with N times the same sequence, or with different homologous 
sequences. What is the best format for the alignment and/or top

(How to force MODELLER to model the sequence X on the chain A and the
sequence Y on the chaine B?)

Regards,

--
Dr Nicolas Le Novère                    http://www-alt.pasteur.fr/~lenov
Dpt of Zoology, Univ of Cambridge, Downing street, Cambridge CB2 3EJ, UK
tel: +44 1223 336623  fax: +44 1223 336676   e-mail: nl223 AT cus.cam.ac.uk