Cyclic peptide...

[Erika Svangard <svangard AT ysbl.york.ac.uk>]

Dear Modellers,

I'm trying to generate a model of a cyclic peptide based on a NMR
structure of a cyclic peptide.
I belive my alignment is fine as all disulfide bonds are conserved, but
I wish to patch the N and C termini with a peptide bond. Please, could
you suggest how I would do this?

I have tried using the link special patch as shown below, but it is not
working. I'm not sure if this is correct.
I also tried with the reisdue IDs in the opposite order ('29' '1'), but
without any luck.

I would like your advice.

Yours
Erika Svangard


SUBROUTINE ROUTINE = 'special_patches'
        PATCH RESIDUE_TYPE = 'LINK', RESIDUE_IDS =  '1' '29'
RETURN
END_SUBROUTINE